pgd.science oregonstate.edu

Protein Geometry Database

The PGD allows you to explore either protein conformation or protein covalent geometry or the correlations between protein conformation and bond angles and lengths. Search results appear on an interactive plot which defaults to a Ramachandran plot. Any conformational angle, bond length, or bond angle of any of the residues in the motif can be plotted. The colors can indicate the observational density or the value of any of the other stereochemical properties of any other residue. Berkholz, D.S., .
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Home Dunbrack Lab

Software for Homology Modeling of Protein Oligomers and Complexes. Conformation-dependent library for backbone geometry in proteins. This page was last modified on Thursday, March 22, 2018.

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PAGE TITLE

Protein Geometry Database

DESCRIPTION

The PGD allows you to explore either protein conformation or protein covalent geometry or the correlations between protein conformation and bond angles and lengths. Search results appear on an interactive plot which defaults to a Ramachandran plot. Any conformational angle, bond length, or bond angle of any of the residues in the motif can be plotted. The colors can indicate the observational density or the value of any of the other stereochemical properties of any other residue. Berkholz, D.S., .

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This web site pgd.science.oregonstate.edu has the following on the homepage, "The PGD allows you to explore either protein conformation or protein covalent geometry or the correlations between protein conformation and bond angles and lengths." Our analyzers noticed that the website also said " Search results appear on an interactive plot which defaults to a Ramachandran plot." The Website also said " Any conformational angle, bond length, or bond angle of any of the residues in the motif can be plotted. The colors can indicate the observational density or the value of any of the other stereochemical properties of any other residue."

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